Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
2CYY Chain:A ((3-50))
------------------VPLDEIDKKIIKILQN---DGKAPLREISKITGLAESTIHERIRKLRESGV---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2CYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13878 for 284 contacts (-48.9/contact) +
2D Compatibility (PS) -5344 + (NN) -1746 + (LL) 5156
1D Compatibility (HY) -1600 + (ID) 200
Total energy: -17612.0 ( -62.01 by residue)
QMean score : 0.665
(partial model without unconserved sides chains):
PDB file :
Tito_2CYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CYY-query.scw
PDB file :
Tito_Scwrl_2CYY.pdb
: