Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVTVGSMNERVPDSSGL---PLRAMVMVLLFLGVVFLLLVWQALGSSPNSEDDSSAISTMTTTTAAPTSTSVKPAAPRAEVRVYNISGTEGAAARTADRLKAAGFTVTDVGNLSLPDVAATTVYYTEVEGERATADAVGRTLGAAVELRLPELSDQPPGVIVVVTG
2WWB Chain:C ((62-90))
-------------DSPGLKVGPVPVLVMSLLFIASVFMLHIW-----------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2WWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12400 for 88 contacts (-140.9/contact) +
2D Compatibility (PS) -2796 + (NN) -3655 + (LL) 8072
1D Compatibility (HY) -4800 + (ID) 700
Total energy: -16279.0 ( -184.99 by residue)
QMean score : 0.269
(partial model without unconserved sides chains):
PDB file :
Tito_2WWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WWB-query.scw
PDB file :
Tito_Scwrl_2WWB.pdb
: