Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD
4YN8 Chain:A ((5-203))
-------SIRVMLIDDHPVVRAGLRSILDSFDDITVVAEASDGSN----INTKGIDVVVTDIQMPGTDGITLTRALANAGGPP-VLILTTYDTEADILAAVEAGAMGYLLKDAPESALHDAVVATFEGRRTLAPEV----ANALMQRVSKPRQALSAREIEILQNLEQGLSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI-
General information:
TITO was launched using:
RESULT:
Template:
4YN8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129251 for 1523 contacts (-84.9/contact) +
2D Compatibility (PS) -21639 + (NN) -9433 + (LL) 692
1D Compatibility (HY) -14000 + (ID) 3800
Total energy: -177431.0 ( -116.50 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_4YN8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YN8-query.scw
PDB file :
Tito_Scwrl_4YN8.pdb
: