Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHL--RAEGFDVHSVMCDVRHREEVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAGLGA-YGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILANRLYVLPHAASRASIRRRFERIDRTFDEQAAEGWRH
4YAE Chain:A ((5-264))
-----GTTAFITGGASGIGFGIAQRLLANGARLVLADIRQDHLDEARQFFEERQQGRNVHTIRLDVSDRAQMAEAARECEAVMGGPDILINNAGIDPSGPFKDATYQDWDYGLAINLMGPINGIMAFTPGMRARGRGGHIVNTASLAGLTPMPSFMAIYATAKAAVITLTETIRDSMAEDNIGVTVLMPGPI----------------------------------MEPTEVGDMIVDAIVHNKLYVSTHGNWRETCEARFQ----------------
General information:
TITO was launched using:
RESULT:
Template:
4YAE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163079 for 1873 contacts (-87.1/contact) +
2D Compatibility (PS) -23583 + (NN) -4375 + (LL) 2052
1D Compatibility (HY) -15600 + (ID) 4150
Total energy: -208735.0 ( -111.44 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_4YAE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YAE-query.scw
PDB file :
Tito_Scwrl_4YAE.pdb
: