Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIIPPRLKEPLYRLYELRLRQGLAASKSDLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEEICAPANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSARHRSYGR
2VFW Chain:A ((1-227))
-----------------------------DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEEICAPANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSAR------
General information:
TITO was launched using:
RESULT:
Template:
2VFW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159316 for 1832 contacts (-87.0/contact) +
2D Compatibility (PS) -25451 + (NN) -14087 + (LL) 2592
1D Compatibility (HY) -31200 + (ID) 11350
Total energy: -238812.0 ( -130.36 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_2VFW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VFW-query.scw
PDB file :
Tito_Scwrl_2VFW.pdb
: