Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTILEIKDLHVSVENPAEADHEIPILRGVDLTVKSGETHALMGPNGSGKSTLSYAIAGHPKYHVTSGTITLDGADVLAMSIDERARAGLFLAMQYPVEVPGVSMSNFLRSAATAIRGEPPKLRHWVKEVKAAMAALDIDPAFAERSVNEGFSGGEKKRHEILQLELLKPKIAILDETDSGLDVDALRVVSEGVNRYAESQHGGILLITHYTRILRYIHPEYVHVFVGGRIVESGGSELADELDQNGYVRFSPASGRYPHQPAPTGA
2D2F Chain:A ((2-239))
-SQLEIRDLWASIDGET-------ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGA-LVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGY-------------------
General information:
TITO was launched using:
RESULT:
Template:
2D2F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136893 for 1898 contacts (-72.1/contact) +
2D Compatibility (PS) -26080 + (NN) -11126 + (LL) 1100
1D Compatibility (HY) -26800 + (ID) 6750
Total energy: -206549.0 ( -108.82 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_2D2F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D2F-query.scw
PDB file :
Tito_Scwrl_2D2F.pdb
: