Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVALIWLIAALVLVGAEALTGDMFLLMLGGGALAASVSSWLLAWPMWADGAVFLLVSVLLLVLVRPAVRRRLTQTKGVQLGIEALEGKKAVVLGRVA-RDGGQVKLDGQVWTARPLNDGDVFEPGDSVTVVQIDGATAVVFKDV
2K5H Chain:A ((42-94))
---------------------------------------------------------------------------------------GRKGVVMEAISPQNSGLVKVDGETWRA---TSGTVLDVGEEVSVKAIEGVKLVVEK--
General information:
TITO was launched using:
RESULT:
Template:
2K5H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16559 for 335 contacts (-49.4/contact) +
2D Compatibility (PS) -5678 + (NN) 1754 + (LL) 9200
1D Compatibility (HY) -4400 + (ID) 1050
Total energy: -16733.0 ( -49.95 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_2K5H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K5H-query.scw
PDB file :
Tito_Scwrl_2K5H.pdb
: