Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGPTTDADAAVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTMKRVAEVVLETLGTPKDT
1SD5 Chain:A ((13-200))
------------PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTMKRVAEVVLETLG-----
General information:
TITO was launched using:
RESULT:
Template:
1SD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98208 for 1535 contacts (-64.0/contact) +
2D Compatibility (PS) -21168 + (NN) -13260 + (LL) 476
1D Compatibility (HY) -25200 + (ID) 9400
Total energy: -166760.0 ( -108.64 by residue)
QMean score : 0.662
(partial model without unconserved sides chains):
PDB file :
Tito_1SD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SD5-query.scw
PDB file :
Tito_Scwrl_1SD5.pdb
: