Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRVVVIGSGFAGLWAALGAARRLDELAVLAGTVDVMVVSNKPFHDIRVRNYEA----DLSACRIPLGDVLGPA-------GVAHVTAEVTAIDADGRRVTTSTGASYSYDRLVLASGSHVVKPALPGLAEFGFDVDTYDGAVRLQQHLQGLAGGPLTSAAA-----TVVVVGAGLTGIETACELPGRLHALFARG--DGVTPRVVLIDHNPFVGSDMGLSARPVIEQA---LLDNGVETRTGVSVAAVSPGGVTLS-SGER--LAAATVVWCAGMRASRLTEQLPVARDRLGRLQVDDYLRVIGVPAMFAAGDVAAARMDDEHLSVMSCQHGRPMGRYAGCNVINDLFDQPLLALRIPWYVTVLDLGSAGAVYTEGWERKVVSQGAPAKTTKQSINTRRIYPPLNGSRADLLAAAAPRVQPRP |
| 4XDB Chain:A ((13-311)) | --KVLVLGAGYAGLQTVTKLQK-----AISTEEAEITLINKNEYH------YEATWLHEASAGTLNYEDVLYPVESVLKKDKVNFVQAEVTKIDRDAKKVETNQGI-YDFDILVVALGFVSETFGIEGMKDHAFQIENVITARELSRHIEDKFANYAASKEKDDNDLSILVGGAGFTGVEFLGELTDRIPELCSKYGVDQNKVKITCVEAAPKM---LPMFSEELVNHAVSYLEDRGVEFKIATPIVACNEKGFVVEVDGEKQQLNAGTSVWAAGVRGSKLMEESFEGVKR-GRIVTKQDLTINGYDNIFVIGDCSA----------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4XDB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -237559 for 2164 contacts (-109.8/contact) +
2D Compatibility (PS) -29609 + (NN) -8912 + (LL) 7312
1D Compatibility (HY) -16400 + (ID) 4250
Total energy: -289418.0 ( -133.74 by residue)
QMean score : 0.362
|
|
|