Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLTTMIKTAVAVVAMAAIATFAAPVALAAYPITGKLGSELTMTDTVGQVVLGWKVSDLKSSTAVIPGYPVAGQVWEATATVNAIRGSVTPAVSQFNARTADGINYRVLWQAAGPDTISGATIPQGEQSTGKIYFDVTGPSPTIVAMNNGMEDLLIWEP
2OKF Chain:A ((67-119))
-----------------------------------------------------------------------------------------SSAISEFHTALGQFINYRGALRKVEPDRVLYLAVP---LTTYKTFFQLDFPKEIII--------------
General information:
TITO was launched using:
RESULT:
Template:
2OKF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3308 for 271 contacts (-12.2/contact) +
2D Compatibility (PS) -5377 + (NN) 1303 + (LL) 8624
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -3108.0 ( -11.47 by residue)
QMean score : -0.058
(partial model without unconserved sides chains):
PDB file :
Tito_2OKF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OKF-query.scw
PDB file :
Tito_Scwrl_2OKF.pdb
: