Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTATQSPPEPAPDRVRLAGCPLAGTPDVGLTAQDATTALGVPTRRRASSGGIPVATSMWRDAQTVRTYGPAVAKALALRVAGKARSRLTGRHCRKFMQLTDFDPFDPAIAADPYPHYRELLAGERVQYN--PKRDVYILSRYADVREAARN-------HDTLSSARGVTFSRGWLPFLPTSDPPAHTRMRKQLAPGMARGALETWRPMVDQLARELVGGLLTQTPADVVSTVAAPMPMRAITSVLGVDGPDEAAFCRLSNQAVRITDV-ALSASGLISLVQGFAGFRRLRALFTHRR---DNGLLRECTVLGKLATHAEQG-RLSDDELFFFAVLLLVAGYESTAHMISTLFLTLADYPDQLTLLAQQPDLIPSAIEEHLRFISPI-QNICRTTRVDYSVGQAVIPAGSLVLLAWGAANRDPRQYEDPDVFRADRNPVGHLAFGSGIHLCPGTQLARMEGQAILREIVANIDRIEV-----VEPPTWTTNANLRGLTRLRVAVTPRVAP |
| 3A4G Chain:A ((12-403)) | ------------------------------------------------------------------------------------------------------DLFSGTFWQNPHPAYAALRAEDPVRKLALPDGPVWLLTRYADVREAFVDPRLSKDWRHTLPEDQRADMPATPTPMMILMDPPDHTRLRKLVGRSFTVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGVPAEDRDDFSAWS--SVLVDDSPADDKNAAMGKLHGY-----LSDLLERKRTEPDDALLSSL-----LAVSDEDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFA--DRPELALAVGLDELVYRESTLVRGLSRMPVTMGPRSA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3A4G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -239347 for 2956 contacts (-81.0/contact) +
2D Compatibility (PS) -40870 + (NN) -27084 + (LL) 6464
1D Compatibility (HY) -28800 + (ID) 6950
Total energy: -336587.0 ( -113.87 by residue)
QMean score : 0.497
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