Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIEPQHAVNIVLKEAARSGRADETMVLVTEKVEATLRWAGNSMTTNGVSHSRNVTVISIVRRGDSAFVGSVVSAEVDPSVLPGLVVSSQDAARSAPEAGDAAPLLADTGEPDDWDAPVPGTGAGVFTGIAGSLSRGFRGADRLYGYAHRSVSTTFLASSTGLRRRYTQPTGAIEINAKRGDASAWVGIGTPDFVEVPIDLMLERLSTRLRWAQRTVELPAGRYQTIMPPSTVADMMIYLGWSMAGRGAQEGRTAFSAPGGGTRVGERLTELPLTLFTDPA-APGLACTPFVAVSNSSETQSVFDNGMEISQVDWIRSGVINALAYPRATAAKFDA-PVAVAADNLIMTGGSADLADMIAGTERGLLLTTLWYIREVDPTTLLLTGLTRDGVYLVEDGEVSAAVNNFRFNESPLDLLRRATEAGVSEPTLPREWSDWVTRTAMPPLRIPDFHMSSVSQAQ |
| 1VPB Chain:A ((230-436)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LERVLRKL--GQKKVQ--SGKYTMVVDPMNSSRLLSPMISALNGSALQQ-KNSFLL----NKLNEKIASDRLTLTDEPHLVKASGARYFDNEGIATERRSIFD------------KGVLNTYFIDTYNAKKMGVDPTISGSSILVMETGDKNLDGLIAGVEKGILVTGFNGGNNNSSTGDFSYGIEG---FLIENGKLTQPVSEMNVTGNLITLWNSLVATG-NDPRLNSSW-------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VPB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -78810 for 1559 contacts (-50.6/contact) +
2D Compatibility (PS) -21330 + (NN) -6584 + (LL) 13132
1D Compatibility (HY) -12000 + (ID) 2500
Total energy: -108092.0 ( -69.33 by residue)
QMean score : 0.305
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