Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQVTDMRSNSQGLSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQ
5DZK Chain:H ((15-192))
--------------SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR--------
General information:
TITO was launched using:
RESULT:
Template:
5DZK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124691 for 1351 contacts (-92.3/contact) +
2D Compatibility (PS) -20002 + (NN) -8937 + (LL) 1260
1D Compatibility (HY) -25200 + (ID) 8900
Total energy: -186470.0 ( -138.02 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_5DZK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DZK-query.scw
PDB file :
Tito_Scwrl_5DZK.pdb
: