Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGIVGVGIDLVSIPDFAEQVDQPGTVFAETFTPGERRDASDKSSSAARHLAARWAAKEAVIKAWSGSRFAQRPVLPEDIHRDIEVVTDMWGRPRVRLTGAIAEYLADVTIHVSLTHEGDTAAAVAILEAP
3NE3 Chain:B ((2-130))
-GIVGVGIDLVSIPDFAEQVDQPGTVFAETFTPGERRDASDKSSSAARHLAARWAAKEAVIKAWSGSRFAQRPVLPEDIHRDIEVVTDMWGRPRVRLTGAIAEYLADVTIHVSLTHEGDTAAAVAILEAP
General information:
TITO was launched using:
RESULT:
Template:
3NE3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67254 for 973 contacts (-69.1/contact) +
2D Compatibility (PS) -14183 + (NN) -5411 + (LL) 208
1D Compatibility (HY) -15200 + (ID) 6450
Total energy: -108290.0 ( -111.29 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3NE3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NE3-query.scw
PDB file :
Tito_Scwrl_3NE3.pdb
: