Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVSRRDVLKFAAATPGVLGLGVVASSLRAAPASAGSLGTLLDYAAGVIPASQIRAAGAVGAIRYVSDRRPGGAWMLGKPIQLSEARDLSGNGLKIVSCYQYGKGSTADWLGGASAGVQHARRGSELHAAAGGPTSAPIYASIDDNPSYEQYKNQIVPYLRSWESVIGHQRTGVYANSKTIDWAVNDGLGSYFWQHNWGSPKGYTHPAAHLHQVEIDKRKVGGVGVDVNQILKPQFGQWA
4PMQ Chain:A ((3-206))
------------------------------------SLGTLLDYAAGVIPASQIRAAGAVGAIRYVSDRRPGGAWMLGKPIQLSEARDLSGNGLKIVSCYQYGKGSTADWLGGASAGVQHARRGSELHAAAGGPTSAPIYASIDDNPSYEQYKNQIVPYLRSWESVIGHQRTGVYANSKTIDWAVNDGLGSYFWQHNWGSPKGYTHPAAHLHQVEIDKRKVGGVGVDVNQILKPQFGQWA
General information:
TITO was launched using:
RESULT:
Template:
4PMQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85838 for 1804 contacts (-47.6/contact) +
2D Compatibility (PS) -22307 + (NN) -13141 + (LL) 2388
1D Compatibility (HY) -24400 + (ID) 10200
Total energy: -153498.0 ( -85.09 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_4PMQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PMQ-query.scw
PDB file :
Tito_Scwrl_4PMQ.pdb
: