Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEPDVAGAPASKPEPASTGAASAAQLSGYSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAK-AVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT
1Z9D Chain:A ((7-240))
-----------------------------YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN
General information:
TITO was launched using:
RESULT:
Template:
1Z9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -211118 for 1924 contacts (-109.7/contact) +
2D Compatibility (PS) -25422 + (NN) -11647 + (LL) 960
1D Compatibility (HY) -20400 + (ID) 6400
Total energy: -274027.0 ( -142.43 by residue)
QMean score : 0.674
(partial model without unconserved sides chains):
PDB file :
Tito_1Z9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z9D-query.scw
PDB file :
Tito_Scwrl_1Z9D.pdb
: