Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIDIVTIFPACL-DPLRQSLPGKAIESGLVDLNVHDLRRWTHDVHHSVDDAPYGGGPGMVMKAPVWGEALDEICS--SETLLIVPTPAGVLFTQATAQRWTTESHLVFACGRYEGIDQRVVQDAARRMRVEEVSIGDYVLPGGESAAVVMVEAVLRLLAGVLGNPASHQDDSHSTGLDGLLEGPSYTRPASWRGLDVPEVLLSGDHARIAAWRREVSLQRTRERRPDLSHPD
3KNU Chain:A ((1-211))
MIFNVLTIFPQMFPGPLGVSNLGSALKKGLWTLNVFDIRAFA-----TVDDTPYGGGPGMLLRADVLGRCIDEVLSLHPNTKLMFTSPRGVSFTQDIARQTMNFDNITLLCGRFEGIDERVVD----FYKLQEVSIGDYVLSGGELAAMVIIDTCVRMVPGVI-------------------EYPQYTRPASWKGMEVPEVLLTGNHGEIEKWRRNASL--------------
General information:
TITO was launched using:
RESULT:
Template:
3KNU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153593 for 1331 contacts (-115.4/contact) +
2D Compatibility (PS) -20119 + (NN) -4906 + (LL) 880
1D Compatibility (HY) -23600 + (ID) 4750
Total energy: -206088.0 ( -154.84 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_3KNU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KNU-query.scw
PDB file :
Tito_Scwrl_3KNU.pdb
: