Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAPDVRLTAWVHGWVQGVGFRWWTRCRALELGLTGYAANHADGRVLVVAQGPRAACQKLLQ-LLQGDTTPGRVAKVVADWSQSTEQITGFSER
2GV1 Chain:A ((6-92))
-------IIAWVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGGPRSARVERVLSEPHHPSGELTDFRIR
General information:
TITO was launched using:
RESULT:
Template:
2GV1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50652 for 587 contacts (-86.3/contact) +
2D Compatibility (PS) -9195 + (NN) -2808 + (LL) 400
1D Compatibility (HY) -6800 + (ID) 1950
Total energy: -71005.0 ( -120.96 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_2GV1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GV1-query.scw
PDB file :
Tito_Scwrl_2GV1.pdb
: