Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKGSMTAHATPNEPDYPPPPGGPPPPADIGRLLLRCHDRPGIIAAVSTFLARAGANIISLDQHSTAPEGGTFLQRAIFHLPGLTAAVDELQRDFGSTVADKFGIDYRFAEAAKPKRVAIMASTEDHCLLDLLWRNRRGELEMSVVMVIANHPDLAAHVRPFG-VPFIHIPATRDTRTEAEQRQLQLLS-GNVDLVVLARYMQILSPGFLEAIGCPLINIHHSFLPAFTGAAPYQRARERGVKLIGATAHYVTEVLDEGPIIEQDVVRVDHTHTVDDLVRVGADVERAVLSRAVLWHCQDRVIVHHNQTIVF
3OBI Chain:A ((9-286))
--------------------------------LTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDT-ESGHFFMRVVFNAAAKVIPLASLRTGFG-VIAAKFTMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVF
General information:
TITO was launched using:
RESULT:
Template:
3OBI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -235636 for 2140 contacts (-110.1/contact) +
2D Compatibility (PS) -29392 + (NN) -10072 + (LL) -1128
1D Compatibility (HY) -25200 + (ID) 6550
Total energy: -307978.0 ( -143.91 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_3OBI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OBI-query.scw
PDB file :
Tito_Scwrl_3OBI.pdb
: