Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADKSKRPPRFDLKSADGSFGRLVQIGGTTIVVVFAVVLVFYIVTSRDDKKDGVAGPGDAVRVTSSKLVTQPGTSNPKAVVSFYEDFLCPACGIFERGFGPTVSKLVDIGAVAADYTMVAILDSASNQHYSSRAAAAAYCVADESIEAFRRFHAALFSKDIQPAELGKDFPDNARLIELAREAGVVGKVPDCINSGKYIEKVDGLAAAVNVHATPTVRVNGTEYEWSTPAALVAKIKEIVGDVPGIDSAAATATS
4IHU Chain:A ((12-211))
-------------------------------------------------------GPGDAVRVTSSKLVTQPGTSNPKAVVSFYEDFLCPACGIFERGFGPTVSKLVDIGAVAADYTMVAILDSASNQHYSSRAAAAAYCVADESIEAFRRFHAALFSKDIQPAELGKDFPDNARLIELAREAGVVGKVPDCINSGKYIEKVDGLAAAVNVHATPTVRVNGTEYEWSTPAALVAKIKEIVGDVPGIDSAAATATS
General information:
TITO was launched using:
RESULT:
Template:
4IHU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143019 for 1655 contacts (-86.4/contact) +
2D Compatibility (PS) -21669 + (NN) -7998 + (LL) 3560
1D Compatibility (HY) -24800 + (ID) 10000
Total energy: -203926.0 ( -123.22 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_4IHU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IHU-query.scw
PDB file :
Tito_Scwrl_4IHU.pdb
: