Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKSPPRFLNSPLSDFFIKWMSRINTWMYRRNDGEGLGGTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP
3R5P Chain:A ((6-118))
--------------------------------------GTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP
General information:
TITO was launched using:
RESULT:
Template:
3R5P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67064 for 796 contacts (-84.3/contact) +
2D Compatibility (PS) -12909 + (NN) -8632 + (LL) 1464
1D Compatibility (HY) -15200 + (ID) 5650
Total energy: -107991.0 ( -135.67 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3R5P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5P-query.scw
PDB file :
Tito_Scwrl_3R5P.pdb
: