Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSL--LILDRDGVINLDSDDYIKTLDEWIPIPSSIEAIARLSQAGWTVAVATNQSGIARGYYDLAVLEAMHARLRELVAEQGGEVGLIVYCPHGPDDG-------CDCRKPKPGMLRQIGEHYGVDLSGIWFVGDSIGDLEAARAVDC-QPVLVKTGKGVRTLGKPLPEGTLIFDDLAAVASALLQ
3L8E Chain:A ((3-161))
--KSVPAIFLDRDGTINVDHG-YVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAIKKQQ
General information:
TITO was launched using:
RESULT:
Template:
3L8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94205 for 1168 contacts (-80.7/contact) +
2D Compatibility (PS) -17458 + (NN) -17173 + (LL) 104
1D Compatibility (HY) -14000 + (ID) 2950
Total energy: -145682.0 ( -124.73 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_3L8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L8E-query.scw
PDB file :
Tito_Scwrl_3L8E.pdb
: