Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRCFWCNDDPLYMAYHDEEWGVPQRDPDALFELLLLEGFQAGLSWITVLKKRERYREVLFGFDVQRVAQMSDAEIDELMLDPGIIRNRAKLNAARQNAQAWLELDDP----AGFLWSFVGGQPKINHFAGRAEVPAITPEAEAMSKALRKAGFNFVGPTICYAFMQASGMVMDHTQDCDRYAQLVG
1LMZ Chain:A ((1-182))
MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGCCCYPGNKP
General information:
TITO was launched using:
RESULT:
Template:
1LMZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70129 for 1265 contacts (-55.4/contact) +
2D Compatibility (PS) -19719 + (NN) -15329 + (LL) 0
1D Compatibility (HY) -19600 + (ID) 4750
Total energy: -129527.0 ( -102.39 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_1LMZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LMZ-query.scw
PDB file :
Tito_Scwrl_1LMZ.pdb
: