Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLIVDDHPAIRLA-VRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVLTRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARM--LESLSDREMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI
3C3W Chain:A ((1-193))
MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRS
General information:
TITO was launched using:
RESULT:
Template:
3C3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72253 for 1420 contacts (-50.9/contact) +
2D Compatibility (PS) -21050 + (NN) -11487 + (LL) 0
1D Compatibility (HY) -11600 + (ID) 3550
Total energy: -119940.0 ( -84.46 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_3C3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C3W-query.scw
PDB file :
Tito_Scwrl_3C3W.pdb
: