Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFAQNLLRLRQQNALTQRQMAERLGIT---VSQLRHFETKGGHPSLV-VLQTIAGRFAVPLDWLVCERSERQALPEDLRLQFEAIGRLRLDERRAIRALLDDLIRQYMAKRNAAAKPLPAACAEATETSP
2EF8 Chain:A ((11-79))
--LVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMDILLKDTYESISKS-------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2EF8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30827 for 416 contacts (-74.1/contact) +
2D Compatibility (PS) -6979 + (NN) -3252 + (LL) 5420
1D Compatibility (HY) -7600 + (ID) 1000
Total energy: -44238.0 ( -106.34 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_2EF8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EF8-query.scw
PDB file :
Tito_Scwrl_2EF8.pdb
: