Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVPNSVSYYRSASYSHVGMVRKVNEDA-SLDAPEAGLWVVADGMGGHAAGDFVSSLIVDTLRR-----IPAASSLPAYVGALRTGLAQVNER-VRQEAGLRGVSVMGST--LVLLAARGNQASCLWAGDSRLYRLRGGVLEAISRDHSYVQELLDNALISEEEARHHPRANVVTRAVGVHEQLELSEAALHVLPGDSFLLCSDGLNKTADDSELRDVLSHSDPYAVVRSLVHLGLTRGAPDNITALVVRAF
2J82 Chain:A ((4-238))
-----------AGLTDCGLIRKSNQDAFYIDEKHQRFFIVADGM---AGGEEASRLAVDHIRQYLETHLEDLQHDP--VTLLRQAF-AANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQLQQITSDHTWIAQA----------------RHVLSQCLGREDLSQIDIQPIDLEPGDRLLLCSDGLTEELTDDVISIYLSEPNVQKAAAALVDAAKTHGGRDNVTVVVISV-
General information:
TITO was launched using:
RESULT:
Template:
2J82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111924 for 1738 contacts (-64.4/contact) +
2D Compatibility (PS) -21062 + (NN) -2091 + (LL) 1872
1D Compatibility (HY) -12000 + (ID) 3600
Total energy: -148805.0 ( -85.62 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_2J82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J82-query.scw
PDB file :
Tito_Scwrl_2J82.pdb
: