Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAKVDTRRLVGRLLLVTVLMFAFGFALVPLYDVMCRALGINGKTAGSAYSGEQQVDVGREVKVQFMTSNNIDMVWEFRSAGDQLVVHPGAVNQMVFYARNPSDKPMTAQAIPSIAPAEAAAYFHKTECFCFTQQVLQPGESIEMPVRFIVDRDLPKDV-----RHVTLAYTLFDITARKPPVPVAGR
1SP0 Chain:A ((21-151))
------------------------------------------------VEQASDLILD--EKIKVTFDANVAAGLPWEFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIVKPVETQGIKTLTLSYTFY---PREPSK-----
General information:
TITO was launched using:
RESULT:
Template:
1SP0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51434 for 896 contacts (-57.4/contact) +
2D Compatibility (PS) -12920 + (NN) -3838 + (LL) 4324
1D Compatibility (HY) -8800 + (ID) 2300
Total energy: -74968.0 ( -83.67 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_1SP0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SP0-query.scw
PDB file :
Tito_Scwrl_1SP0.pdb
: