Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQRKAVLVMGAGDATGGAIARRFAREGYVACVARRNAEKLEPLVQAIRDQGGEALACGCDARQEQQVIDLFARIEGEVGALEAVIFNVGANVWFPITETTERVYRKVWEMAAFGGFLTGREAARVMLPRQRGTIIFTGATASLRGRAHF---AAFSGAKFALRALAQSMARELGPKDIHVAHPIIDGAIDTDFIRETLPELYKRKEQDGILDPEHIAETYWQIHCQPRDCWVHELDLRPWMETF
2EHD Chain:A ((4-226))
--MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEG----ALPLPGDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVG---SLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVN-VLPG-----------------------LKPEDVAQAVLFALEMPGHAMVSEIELRP-----
General information:
TITO was launched using:
RESULT:
Template:
2EHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160939 for 1778 contacts (-90.5/contact) +
2D Compatibility (PS) -22122 + (NN) -10107 + (LL) 2648
1D Compatibility (HY) -11600 + (ID) 3350
Total energy: -205470.0 ( -115.56 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_2EHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EHD-query.scw
PDB file :
Tito_Scwrl_2EHD.pdb
: