Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVSSASLAGKVAFVQGGSRGIGAAIVRRLAAEGASVAFTYVSSADKSRALAAELEGAGASILALHADSADAAALVAAVDEAAARFGRIDILVNNAAVLALGSVEELPLADFERTLAINVRSVFVATQAAVKHMGDGGRVISIGSTNAERMPFAGGATYAMSKSALVGLTKGLARDLGPRGITVNNVQPGPVDTDMNPDDGDFAEALKGLMALPRYARSEEIASFVAYLAGPEAAYITGASLTIDGGFSA
4PCV Chain:A ((5-233))
------AFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAKRLAQE---TGAT--AVFTDSADRDAVIDVVRKSGA----LDILVVNAGI---------NADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSV---------MAAYAASKSALQGMARGLARDFGPRGITINVVQPGP-------------------------GQPEEVAGMVAWLAGPEASFVTGAMHTI------
General information:
TITO was launched using:
RESULT:
Template:
4PCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110458 for 1593 contacts (-69.3/contact) +
2D Compatibility (PS) -20946 + (NN) -13385 + (LL) 3276
1D Compatibility (HY) -14400 + (ID) 4850
Total energy: -160763.0 ( -100.92 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_4PCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PCV-query.scw
PDB file :
Tito_Scwrl_4PCV.pdb
: