Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFSTQDSDEVLSEINVTPLVDVMLVLLVVFIVTAPLLTNSIPINLPK-TESVAPPEQKD-PLVVSIDGAGK--LFVNKDEIQ---PELLESNLAAAKAKDAEVRVQLQADEGVNYGQVAKAMASIERAGITRLAVITAR
5BY4 Chain:A ((5-107))
-----------------------------------PIITQSVEVDLPDATESQAVSSNDNPPVIVEVSGIGQYTVVVEKDRLERLPPEQVVAEVSSRFKANPKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQP
General information:
TITO was launched using:
RESULT:
Template:
5BY4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29078 for 591 contacts (-49.2/contact) +
2D Compatibility (PS) -10408 + (NN) -2731 + (LL) 3744
1D Compatibility (HY) -9200 + (ID) 1200
Total energy: -48873.0 ( -82.70 by residue)
QMean score : 0.756
(partial model without unconserved sides chains):
PDB file :
Tito_5BY4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BY4-query.scw
PDB file :
Tito_Scwrl_5BY4.pdb
: