Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLWPATLIGAGAGWALASIPGALLGGLLGQLLDRRLRLESWRGLLARLRGRAVNDEDDLLFQLLGYLAKSGGRVEEMHIRQAREEMALRKLDRRAQRRAIASFGKGKAGIAHLQAEVARLKGERAEAVLLACWRMAWAGGVLSQSARQLVLQWGRWLGWSAERTERLSARVMPKRTRAVARDSYREALLLLGVEAGSEPALIKRAYRKLISQHHPDKLAGAGASVERVRAATEKTRELQAAYALVREREGFR |
4J80 Chain:A ((5-61)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KDYYAILGVPRNATQEEIKRAYKRLARQYHPD--------VNKSPEAEEKFKEINEAYAVMSDPEKRR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J80.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -12382 for 338 contacts (-36.6/contact) +
2D Compatibility (PS) -6187 + (NN) -2688 + (LL) 15644
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -9913.0 ( -29.33 by residue)
QMean score : 0.812
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