Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSGYAERATTRRRQAGFTLIEVMVAIMLMAIVSLMAWRGLDSIARASAHLEDSTEQGAALLRALNQLERDIALHSAIREETGLPSGDEPIRAGDSLPPGLALKRLSEIPLRLDIVRASTEPGAPLQRVRWWRQGKVLYRAASPSGDRLPLPPLAERVA----VLDDVS--RFDIRAWVPGKGWTRLPARSKVRASGLEISLARVTRNGVERYRRVVALQ |
4HHJ Chain:A ((396-435)) | -----------------------------------------------------------------------------------------------------------------------------------------------SGDDCVVKPIDDRFANALLALNDMGKVRKDIPQWQPSKGWHDWQQVPFCSHHFHELIMKDGRKLVVPCRPQDELIG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HHJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1230 for 113 contacts (-10.9/contact) +
2D Compatibility (PS) -3494 + (NN) -2244 + (LL) 11220
1D Compatibility (HY) -2400 + (ID) 800
Total energy: 1052.0 ( 9.31 by residue)
QMean score : 0.144
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