Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLCNVVVLISGSGSNLQALIDSLRDGATPARIRAVISNRADAYGLERARQAGIQTEVLDHKAYADRESFDEALAQRIDAHEPHLVILAGFMRILSADFVRHYQGRLLNIHPSLLPRHKGLHTHQRALEAGDREHGCSVHFVTEELDGGPLVVQAVIPVESQDTPERLARRVHEEEHRIYPLAMRWFAEGRLRLGEQGALLDGQALPATGHQIRTKEIRNA
3GAR Chain:A ((2-208))
-----NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRALIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLDGQRLPPQGYA---------
General information:
TITO was launched using:
RESULT:
Template:
3GAR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147895 for 1703 contacts (-86.8/contact) +
2D Compatibility (PS) -23583 + (NN) -16897 + (LL) 1232
1D Compatibility (HY) -22800 + (ID) 6150
Total energy: -216093.0 ( -126.89 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_3GAR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GAR-query.scw
PDB file :
Tito_Scwrl_3GAR.pdb
: