Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSERYPDAPAVPPTILLNPRVTPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQGLDPQDSRSTAASKGSMRGWCSTSATT
1Y6H Chain:A ((2-135))
-VRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDH
General information:
TITO was launched using:
RESULT:
Template:
1Y6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55340 for 877 contacts (-63.1/contact) +
2D Compatibility (PS) -14304 + (NN) -6529 + (LL) 208
1D Compatibility (HY) -12800 + (ID) 3250
Total energy: -92015.0 ( -104.92 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_1Y6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y6H-query.scw
PDB file :
Tito_Scwrl_1Y6H.pdb
: