Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MCELLGMSANVPTDIVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-----KPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKGVFNALISDGDWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEPLTDNENWTLQQSGEWVLWWGGEVLAKGRV |
4AMV Chain:A ((2-126)) | -CGIVGAIAQ--RDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRR--LGKVQM-LAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHVSE----HIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYM |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AMV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48091 for 917 contacts (-52.4/contact) +
2D Compatibility (PS) -12696 + (NN) -5422 + (LL) 80
1D Compatibility (HY) 0 + (ID) 1800
Total energy: -67929.0 ( -74.08 by residue)
QMean score : 0.239
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