Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLWRQTPDLEQLNASQKNSIGDLLGIRFEAFDDESLTASMPVDSRTHQPFGLLHGGASVVLAESLGSMASYLCVDTSQYYCVGLEVNANHLRGLRSGRVTAVARAIHLGRTTHVWDIRLSGDDGKPSCIARLTMAVVPLAGRAG
4QD9 Chain:A ((2-140))
-SLWRQTPDLEQLNASQKNSIGDLLGIRFEAFDDESLTASMPVDSRTHQPFGLLHGGASVVLAESLGSMASYLCVDTSQYYCVGLEVNANHLRGLRSGRVTAVARAIHLGRTTHVWDIRLSGDDGKPSCIARLTMAVVPL-----
General information:
TITO was launched using:
RESULT:
Template:
4QD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91705 for 1069 contacts (-85.8/contact) +
2D Compatibility (PS) -14817 + (NN) -6102 + (LL) 252
1D Compatibility (HY) -19200 + (ID) 6950
Total energy: -138522.0 ( -129.58 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_4QD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QD9-query.scw
PDB file :
Tito_Scwrl_4QD9.pdb
: