Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHYVTPDLCDAYPELVQVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNNGIIVSPQALKMPE
1Q5X Chain:A ((2-160))
-KYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDIE-
General information:
TITO was launched using:
RESULT:
Template:
1Q5X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112263 for 1382 contacts (-81.2/contact) +
2D Compatibility (PS) -18437 + (NN) -14746 + (LL) 68
1D Compatibility (HY) -18000 + (ID) 4350
Total energy: -167728.0 ( -121.37 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_1Q5X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q5X-query.scw
PDB file :
Tito_Scwrl_1Q5X.pdb
: