Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHDEREGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVRSSE---SIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLLN
4LFU Chain:A ((10-240))
----RRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIV--MTPEMN--FSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI-
General information:
TITO was launched using:
RESULT:
Template:
4LFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129154 for 1725 contacts (-74.9/contact) +
2D Compatibility (PS) -24544 + (NN) -12907 + (LL) 452
1D Compatibility (HY) -14000 + (ID) 3850
Total energy: -184003.0 ( -106.67 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_4LFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFU-query.scw
PDB file :
Tito_Scwrl_4LFU.pdb
: