Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFLRPLPESLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQRGLLKDFWGPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEVLE
1NF8 Chain:A ((1-207))
MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHAMQRYFLRPLPESLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQRGLLKDFWGPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEVLE
General information:
TITO was launched using:
RESULT:
Template:
1NF8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170601 for 1734 contacts (-98.4/contact) +
2D Compatibility (PS) -22205 + (NN) -13288 + (LL) 0
1D Compatibility (HY) -29600 + (ID) 10300
Total energy: -245994.0 ( -141.87 by residue)
QMean score : 0.784
(partial model without unconserved sides chains):
PDB file :
Tito_1NF8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NF8-query.scw
PDB file :
Tito_Scwrl_1NF8.pdb
: