Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNPLIKTILSTNAGAGLAILRIVTGLTLMSHGSQKLFGMFGGAGLNGMAQWFESIGLTPGYLLATLAGSAEFFGGLALVIGLLVRPASVVVGFTMIVAIFSVHIGNGFFITDNGYEYALTLLMISVALLIDGAGKFSLDGKLSR |
2K1K Chain:A ((555-565)) | -----------------------------------------------------------------------LLLGAALLLGI-------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2K1K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -4829 for 36 contacts (-134.1/contact) +
2D Compatibility (PS) -1061 + (NN) 1641 + (LL) 8976
1D Compatibility (HY) -2000 + (ID) 200
Total energy: 2527.0 ( 70.19 by residue)
QMean score : -0.129
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