Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGH-SAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGIYAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMRQALETDTSLCVPLPTLR
1V4B Chain:A ((1-191))
-SKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALR----APLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTFLGFIGITDVKFVFAEGIAYGPEMAAKAQSDAK---------------------
General information:
TITO was launched using:
RESULT:
Template:
1V4B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112074 for 1414 contacts (-79.3/contact) +
2D Compatibility (PS) -20376 + (NN) -6454 + (LL) 1804
1D Compatibility (HY) -17600 + (ID) 4550
Total energy: -159250.0 ( -112.62 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_1V4B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V4B-query.scw
PDB file :
Tito_Scwrl_1V4B.pdb
: