Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRFMALALCFVLPTAAHAASLKDFEL---SKMLEKVAKESSV--GTPRAINE-----DILDQGYTVEGNQL---------INHLSVRASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLARGAILTYSFTEYKTNQPVATERFDAGSCRIQGKK
3LOY Chain:A ((253-369))
----------FVIPTVREGFAIYDIHFKGRSVVYRLSLSEMTVPYGDPRAPFHRKQAFDLGDCGFGATGNSLALGCDCLGVIKYMDCR-----RVNTNGDSVL--IPNTVC-------LHEQDGGLLYKHTNYRTNVPVIARR------------
General information:
TITO was launched using:
RESULT:
Template:
3LOY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7125 for 502 contacts (-14.2/contact) +
2D Compatibility (PS) -10084 + (NN) 263 + (LL) 2412
1D Compatibility (HY) -7200 + (ID) 1800
Total energy: -23534.0 ( -46.88 by residue)
QMean score : 0.135
(partial model without unconserved sides chains):
PDB file :
Tito_3LOY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LOY-query.scw
PDB file :
Tito_Scwrl_3LOY.pdb
: