Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPVLPEQAQEALDAFGHTASWEQRARLLLQWGERLAPLAEHERQEEHRVHGCESLVWLLGEQR-DGHWRFRADSDARLIRGLLAVLLARVDGIETRELARLDLNDWFTCLGLSRQLSPSRSNGLNAVLQRMRELAGQTAG
1MZG Chain:A ((3-123))
---LLPDK-EKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSPQNSIQGCQSQVWIVMRQNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDVRPWFEKMALTQHLTPSRSQGL----------------
General information:
TITO was launched using:
RESULT:
Template:
1MZG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28559 for 768 contacts (-37.2/contact) +
2D Compatibility (PS) -12613 + (NN) -7860 + (LL) 1388
1D Compatibility (HY) -4000 + (ID) 950
Total energy: -52594.0 ( -68.48 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_1MZG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MZG-query.scw
PDB file :
Tito_Scwrl_1MZG.pdb
: