Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASHELDYRILGESMQTVEIELDPGETVIAEAGAMNYMTGDIRFTARMGDGSDGSLLGKLWSA-GKRKLGGESVFMTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKRLGAGFFGGEG-FILQKLEGDGLVFVHAGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLAGGLKSMLFGGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDATFRAREEVRTNNG
1PG6 Chain:A ((26-234))
-----------------VEIDLEHGGSVYLQQGSMVYHTENVTLNTKLN--G----LGKLVGAIGRSMVSGESMFITQAMSNGDGK--LALAPNTPGQIVALELGEKQYRL---NDGAFLALDGSAQYKMERQNIG-------GGLFVMTTEGLGTLLANSFGSIKKITLDGGTMTIDNAHVVAWSRELDYDIHLENGFMQSIGTGEG-VVNTFRGHGEIYIQSLNLEQFAGTL----------------
General information:
TITO was launched using:
RESULT:
Template:
1PG6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110115 for 1445 contacts (-76.2/contact) +
2D Compatibility (PS) -21463 + (NN) -6324 + (LL) 2632
1D Compatibility (HY) -15600 + (ID) 3200
Total energy: -154070.0 ( -106.62 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_1PG6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PG6-query.scw
PDB file :
Tito_Scwrl_1PG6.pdb
: