Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVKGALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMGMKVGGKRRLFVPSHLAYGERQVGAHIKPHSNLLFEIELLEVLTRDD
4DZ3 Chain:A ((10-113))
----LKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV-----
General information:
TITO was launched using:
RESULT:
Template:
4DZ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58491 for 774 contacts (-75.6/contact) +
2D Compatibility (PS) -10448 + (NN) 5914 + (LL) 328
1D Compatibility (HY) -7600 + (ID) 2700
Total energy: -72997.0 ( -94.31 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_4DZ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DZ3-query.scw
PDB file :
Tito_Scwrl_4DZ3.pdb
: