Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTRKLGNSGLEIPALVFGGNV-FGWTADESTSFRLLDALLDAGLNCIDTADVYSRWVPGHQGGESETLIGKWLKRTG-KRDRMVIASKVGMD-MGNGHKGLSAAYIEQALERSLRRLQTDYLDLYQSHTDDPHTDLEETLSTYGELIKKGKVRVIGASNYDARRLLEARQVSARLNLPSYQSLQPEYNLYDRADYETNLEPTVEELGIGVISYYSLASGFLSGKYRNQADTAGRARGEKVKGY-------LNERG---VAILAALDEVAEQYNANPTQVALAWLIARPTVTAPIASATSLEQLDDLIAATHL--KLDEQAIHRLDSASAY |
3EB4 Chain:A ((6-319)) | ---RNLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYA-------AGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPRCEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRA---SLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDS---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3EB4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139434 for 2552 contacts (-54.6/contact) +
2D Compatibility (PS) -33186 + (NN) -21583 + (LL) 996
1D Compatibility (HY) -26000 + (ID) 5000
Total energy: -224207.0 ( -87.86 by residue)
QMean score : 0.567
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