Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALQRTLSIIKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGSDSEASAAREIAYFFAATEVCERIR
3VGV Chain:A ((2-141))
-ATERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEH----FFGDLVGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVHGSDSPESAAREIAYFFAESEICSR--
General information:
TITO was launched using:
RESULT:
Template:
3VGV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44916 for 1053 contacts (-42.7/contact) +
2D Compatibility (PS) -14276 + (NN) -370 + (LL) 640
1D Compatibility (HY) -14800 + (ID) 5350
Total energy: -79072.0 ( -75.09 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_3VGV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VGV-query.scw
PDB file :
Tito_Scwrl_3VGV.pdb
: