Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLYRAAIHQLFLALDLPTPNDEESVLSLQVGPHLCHLAEHPTDHLLMFT--RLEGQGDA-TANEQNLFSQDPCKPILGRDPESGERLLWNRQPLQLLDRAQIHHQLEQLVAAAEELR
1L2W Chain:A ((0-118))
MGYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQ
General information:
TITO was launched using:
RESULT:
Template:
1L2W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13321 for 740 contacts (-18.0/contact) +
2D Compatibility (PS) -12284 + (NN) -7412 + (LL) 0
1D Compatibility (HY) 3600 + (ID) 300
Total energy: -29717.0 ( -40.16 by residue)
QMean score : 0.173
(partial model without unconserved sides chains):
PDB file :
Tito_1L2W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2W-query.scw
PDB file :
Tito_Scwrl_1L2W.pdb
: