Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALTNEDIINAVSEMSVMQVVELIKAMEEKFGVTAAAATVAAAGPAAAAAEEQTEFTIVLAEAGDKKVNVIKVVRELTGLGLKEAKAVVDGAPGVVKEGASKEEAEAAKKALEEAGAKVELK
1RQV Chain:A ((1-120))
-SITKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAA-GPVEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEVK
General information:
TITO was launched using:
RESULT:
Template:
1RQV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30738 for 791 contacts (-38.9/contact) +
2D Compatibility (PS) -13421 + (NN) -6241 + (LL) 36
1D Compatibility (HY) -10400 + (ID) 3850
Total energy: -64614.0 ( -81.69 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_1RQV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RQV-query.scw
PDB file :
Tito_Scwrl_1RQV.pdb
: