Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEFHDDDSQFEEKSKSQIKRELHALQDLGERLTTLQPQLLERLPLTDPLRKALLEAPKHKA--HIARKRHIQYIGKLMRDQDVDAIVALIDQVDSSTRQYNERFHALERWRDQLIAGGDAALDAFVGEFPECDRQHLRGLVRHAQHEAAHNKPPAAARKVFKYIRELDETKRGLR
2PN1 Chain:A ((36-120))
----------------------------------------------CSPLASALYMADQHYIVPKIDEVEYIDHLLTLCQDEGVTALLTLIDPELGLLAQATERFQAI--------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2PN1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13574 for 292 contacts (-46.5/contact) +
2D Compatibility (PS) -5982 + (NN) 2384 + (LL) 8424
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -14548.0 ( -49.82 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_2PN1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PN1-query.scw
PDB file :
Tito_Scwrl_2PN1.pdb
: